Loading...
Sign in to edit your profile (add interests, overview, photo, etc.)

    Mofrad, Mohammad

    TitleBiological Faculty Engineer
    SchoolLawrence Berkeley National Lab
    DepartmentMolecular Biophys & Integ Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/495-2116
    vCardDownload vCard

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Madani A, Garakani K, Mofrad M. Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen. PLoS One. 2017; 12(6):e0179601. PMID: 28665944.
        View in: PubMed
      2. Garakani K, Shams H, Mofrad M. Mechanosensitive Conformation of Vinculin Regulates Its Binding to MAPK1. Biophys J. 2017 May 09; 112(9):1885-1893. PMID: 28494959.
        View in: PubMed
      3. Jahed Z, Shahsavan H, Verma MS, Rogowski JL, Seo BB, Zhao B, Tsui TY, Gu FX, Mofrad M. Bacterial Networks on Hydrophobic Micropillars. ACS Nano. 2017 Jan 03. PMID: 28045495.
        View in: PubMed
      4. Soheilypour M, Mofrad M. Regulation of RNA-binding proteins affinity to export receptors enables the nuclear basket proteins to distinguish and retain aberrant mRNAs. Sci Rep. 2016 Nov 02; 6:35380. PMID: 27805000.
        View in: PubMed
      5. Pezeshki-Modaress M, Mirzadeh H, Zandi M, Rajabi-Zeleti S, Sodeifi N, Aghdami N, Mofrad M. Gelatin/Chondroitin Sulfate Nanofibrous Scaffolds for Stimulation of Wound Healing: In-Vitro and In-Vivo Study. J Biomed Mater Res A. 2016 Sep 02. PMID: 27588562.
        View in: PubMed
      6. Jahed Z, Zareian R, Chau YY, Seo BB, West M, Tsui TY, Wen W, Mofrad M. Differential Collective- and Single-Cell Behaviors on Silicon Micropillar Arrays. ACS Appl Mater Interfaces. 2016 Sep 14; 8(36):23604-13. PMID: 27536959.
        View in: PubMed
      7. Jahed Z, Soheilypour M, Peyro M, Mofrad M. The LINC and NPC relationship - it's complicated! J Cell Sci. 2016 Sep 1; 129(17):3219-29. PMID: 27530973.
        View in: PubMed
      8. Moussavi-Baygi R, Mofrad M. Rapid Brownian Motion Primes Ultrafast Reconstruction of Intrinsically Disordered Phe-Gly Repeats Inside the Nuclear Pore Complex. Sci Rep. 2016; 6:29991. PMID: 27470900.
        View in: PubMed
      9. Haji Abdolvahab M, Mofrad M, Schellekens H. Interferon Beta: From Molecular Level to Therapeutic Effects. Int Rev Cell Mol Biol. 2016; 326:343-72. PMID: 27572132.
        View in: PubMed
      10. Hasan A, Saliba J, Pezeshgi Modarres H, Bakhaty A, Nasajpour A, Mofrad M, Sanati-Nezhad A. Micro and nanotechnologies in heart valve tissue engineering. Biomaterials. 2016 Oct; 103:278-92. PMID: 27414719.
        View in: PubMed
      11. Shams H, Golji J, Garakani K, Mofrad M. Dynamic Regulation of a-Actinin's Calponin Homology Domains on F-Actin. Biophys J. 2016 Mar 29; 110(6):1444-55. PMID: 27028653.
        View in: PubMed
      12. Peyro M, Soheilypour M, Ghavami A, Mofrad M. Nucleoporin's Like Charge Regions Are Major Regulators of FG Coverage and Dynamics Inside the Nuclear Pore Complex. PLoS One. 2015; 10(12):e0143745. PMID: 26658558.
        View in: PubMed
      13. Asgari E, Mofrad M. Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics. PLoS One. 2015; 10(11):e0141287. PMID: 26555596.
        View in: PubMed
      14. Peyro M, Soheilypour M, Lee BL, Mofrad M. Evolutionarily Conserved Sequence Features Regulate the Formation of the FG Network at the Center of the Nuclear Pore Complex. Sci Rep. 2015; 5:15795. PMID: 26541386.
        View in: PubMed
      15. Heidari M, Mehrbod M, Ejtehadi MR, Mofrad M. Cooperation within von Willebrand factors enhances adsorption mechanism. J R Soc Interface. 2015 Aug 6; 12(109). PMID: 26179989.
        View in: PubMed
      16. Jahed Z, Shams H, Mofrad M. A Disulfide Bond Is Required for the Transmission of Forces through SUN-KASH Complexes. Biophys J. 2015 Aug 4; 109(3):501-9. PMID: 26244732.
        View in: PubMed
      17. Lazarus C, Soheilypour M, Mofrad M. Torsional Behavior of Axonal Microtubule Bundles. Biophys J. 2015 Jul 21; 109(2):231-9. PMID: 26200859.
        View in: PubMed
      18. Truong T, Shams H, Mofrad M. Mechanisms of integrin and filamin binding and their interplay with talin during early focal adhesion formation. Integr Biol (Camb). 2015 Oct 5; 7(10):1285-96. PMID: 26156744.
        View in: PubMed
      19. Bakhaty AA, Mofrad M. Coupled Simulation of Heart Valves: Applications to Clinical Practice. Ann Biomed Eng. 2015 Jul; 43(7):1626-39. PMID: 26101029.
        View in: PubMed
      20. Soheilypour M, Peyro M, Peter SJ, Mofrad M. Buckling behavior of individual and bundled microtubules. Biophys J. 2015 Apr 7; 108(7):1718-26. PMID: 25863063.
        View in: PubMed
      21. Mahboobi SH, Javanpour AA, Mofrad M. The Interaction of RNA Helicase DDX3 with HIV-1 Rev-CRM1-RanGTP Complex during the HIV Replication Cycle. PLoS One. 2015; 10(2):e0112969. PMID: 25723178.
        View in: PubMed
      22. Shamloo A, Heibatollahi M, Mofrad M. Directional migration and differentiation of neural stem cells within three-dimensional microenvironments. Integr Biol (Camb). 2015 Mar 9; 7(3):335-44. PMID: 25633746.
        View in: PubMed
      23. Kheradvar A, Groves EM, Dasi LP, Alavi SH, Tranquillo R, Grande-Allen KJ, Simmons CA, Griffith B, Falahatpisheh A, Goergen CJ, Mofrad M, Baaijens F, Little SH, Canic S. Emerging trends in heart valve engineering: part I. Solutions for future. Ann Biomed Eng. 2015 Apr; 43(4):833-43. PMID: 25488074.
        View in: PubMed
      24. Kheradvar A, Groves EM, Goergen CJ, Alavi SH, Tranquillo R, Simmons CA, Dasi LP, Grande-Allen KJ, Mofrad M, Falahatpisheh A, Griffith B, Baaijens F, Little SH, Canic S. Emerging Trends in Heart Valve Engineering: Part II. Novel and Standard Technologies for Aortic Valve Replacement. Ann Biomed Eng. 2015 Apr; 43(4):844-57. PMID: 25449148.
        View in: PubMed
      25. Golji J, Mofrad M. The talin dimer structure orientation is mechanically regulated. Biophys J. 2014 Oct 21; 107(8):1802-9. PMID: 25418161.
        View in: PubMed
      26. Kheradvar A, Groves EM, Simmons CA, Griffith B, Alavi SH, Tranquillo R, Dasi LP, Falahatpisheh A, Grande-Allen KJ, Goergen CJ, Mofrad M, Baaijens F, Canic S, Little SH. Emerging Trends in Heart Valve Engineering: Part III. Novel Technologies for Mitral Valve Repair and Replacement. Ann Biomed Eng. 2015 Apr; 43(4):858-70. PMID: 25287646.
        View in: PubMed
      27. Azimi M, Bulat E, Weis K, Mofrad M. An agent-based model for mRNA export through the nuclear pore complex. Mol Biol Cell. 2014 Nov 5; 25(22):3643-53. PMID: 25253717.
        View in: PubMed
      28. Jahed Z, Molladavoodi S, Seo BB, Gorbet M, Tsui TY, Mofrad M. Cell responses to metallic nanostructure arrays with complex geometries. Biomaterials. 2014 Nov; 35(34):9363-71. PMID: 25123921.
        View in: PubMed
      29. Rui X, Mehrbod M, Van Agthoven JF, Anand S, Xiong JP, Mofrad M, Arnaout MA. The a-Subunit Regulates Stability of the Metal Ion at the Ligand-associated Metal Ion-binding Site in ß3 Integrins. J Biol Chem. 2014 Aug 15; 289(33):23256-63. PMID: 24975416.
        View in: PubMed
      30. Zhao CL, Mahboobi SH, Moussavi-Baygi R, Mofrad M. The Interaction of CRM1 and the Nuclear Pore Protein Tpr. PLoS One. 2014; 9(4):e93709. PMID: 24722547.
        View in: PubMed
      31. Mahalingam B, Van Agthoven JF, Xiong JP, Alonso JL, Adair BD, Rui X, Anand S, Mehrbod M, Mofrad M, Burger C, Goodman SL, Arnaout MA. Atomic Basis for the Species-specific Inhibition of aV Integrins by Monoclonal Antibody 17E6 Is Revealed by the Crystal Structure of aVß3 Ectodomain-17E6 Fab Complex. J Biol Chem. 2014 May 16; 289(20):13801-9. PMID: 24692540.
        View in: PubMed
      32. Jahed Z, Lin P, Seo BB, Verma MS, Gu FX, Tsui TY, Mofrad M. Responses of Staphylococcus aureus bacterial cells to nanocrystalline nickel nanostructures. Biomaterials. 2014 May; 35(14):4249-54. PMID: 24576805.
        View in: PubMed
      33. Jahed Z, Shams H, Mehrbod M, Mofrad M. Mechanotransduction pathways linking the extracellular matrix to the nucleus. Int Rev Cell Mol Biol. 2014; 310:171-220. PMID: 24725427.
        View in: PubMed
      34. Shams H, Holt BD, Mahboobi SH, Jahed Z, Islam MF, Dahl KN, Mofrad M. Actin Reorganization through Dynamic Interactions with Single-Wall Carbon Nanotubes. ACS Nano. 2014 Jan 28; 8(1):188-97. PMID: 24351114.
        View in: PubMed
      35. Azimi M, Mofrad M. Higher nucleoporin-importinß affinity at the nuclear basket increases nucleocytoplasmic import. PLoS One. 2013; 8(11):e81741. PMID: 24282617.
        View in: PubMed
      36. Abdul Rahim NA, Pelet S, Mofrad M, So PT, Kamm RD. Quantifying intracellular protein binding thermodynamics during mechanotransduction based on FRET spectroscopy. Methods. 2014 Mar 15; 66(2):208-21. PMID: 24184188.
        View in: PubMed
      37. Hasan A, Ragaert K, Swieszkowski W, Selimovic S, Paul A, Camci-Unal G, Mofrad M, Khademhosseini A. Biomechanical properties of native and tissue engineered heart valve constructs. J Biomech. 2014 Jun 27; 47(9):1949-63. PMID: 24290137.
        View in: PubMed
      38. Mehrbod M, Trisno S, Mofrad M. On the activation of integrin aIIbß3: outside-in and inside-out pathways. Biophys J. 2013 Sep 17; 105(6):1304-15. PMID: 24047981.
        View in: PubMed
      39. Golji J, Mofrad M. The interaction of vinculin with actin. PLoS Comput Biol. 2013 Apr; 9(4):e1002995. PMID: 23633939.
        View in: PubMed
      40. Mehrbod M, Mofrad M. Localized lipid packing of transmembrane domains impedes integrin clustering. PLoS Comput Biol. 2013; 9(3):e1002948. PMID: 23516344.
        View in: PubMed
      41. Shams H, Golji J, Mofrad M. A molecular trajectory of a-actinin activation. Biophys J. 2012 Nov 21; 103(10):2050-9. PMID: 23200039.
        View in: PubMed
      42. Holt BD, Shams H, Horst TA, Basu S, Rape AD, Wang YL, Rohde GK, Mofrad M, Islam MF, Dahl KN. Altered cell mechanics from the inside: dispersed single wall carbon nanotubes integrate with and restructure actin. J Funct Biomater. 2012; 3(2):398-417. PMID: 24955540.
        View in: PubMed
      43. Golji J, Wendorff T, Mofrad M. Phosphorylation primes vinculin for activation. Biophys J. 2012 May 2; 102(9):2022-30. PMID: 22824265.
        View in: PubMed
      44. Yoon SH, Kim YK, Han ED, Seo YH, Kim BH, Mofrad M. Passive control of cell locomotion using micropatterns: the effect of micropattern geometry on the migratory behavior of adherent cells. Lab Chip. 2012 Jul 7; 12(13):2391-402. PMID: 22534829.
        View in: PubMed
      45. Peter SJ, Mofrad M. Computational modeling of axonal microtubule bundles under tension. Biophys J. 2012 Feb 22; 102(4):749-57. PMID: 22385845.
        View in: PubMed
      46. Mehrbod M, Mofrad M. On the significance of microtubule flexural behavior in cytoskeletal mechanics. PLoS One. 2011; 6(10):e25627. PMID: 21998675.
        View in: PubMed
      47. Azimi M, Jamali Y, Mofrad M. Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion. PLoS One. 2011; 6(9):e25306. PMID: 21966493.
        View in: PubMed
      48. Yoon SH, Chang J, Lin L, Mofrad M. A biological breadboard platform for cell adhesion and detachment studies. Lab Chip. 2011 Oct 21; 11(20):3555-62. PMID: 21874200.
        View in: PubMed
      49. Yoon SH, Mofrad M. Cell adhesion and detachment on gold surfaces modified with a thiol-functionalized RGD peptide. Biomaterials. 2011 Oct; 32(30):7286-96. PMID: 21813174.
        View in: PubMed
      50. Moussavi-Baygi R, Jamali Y, Karimi R, Mofrad M. Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex. PLoS Comput Biol. 2011 Jun; 7(6):e1002049. PMID: 21673865.
        View in: PubMed
      51. Moussavi-Baygi R, Jamali Y, Karimi R, Mofrad M. Biophysical coarse-grained modeling provides insights into transport through the nuclear pore complex. Biophys J. 2011 Mar 16; 100(6):1410-9. PMID: 21402022.
        View in: PubMed
      52. Golji J, Lam J, Mofrad M. Vinculin activation is necessary for complete talin binding. Biophys J. 2011 Jan 19; 100(2):332-40. PMID: 21244829.
        View in: PubMed
      53. Jamali T, Jamali Y, Mehrbod M, Mofrad M. Nuclear pore complex: biochemistry and biophysics of nucleocytoplasmic transport in health and disease. Int Rev Cell Mol Biol. 2011; 287:233-86. PMID: 21414590.
        View in: PubMed
      54. Kolahi KS, Mofrad M. Mechanotransduction: a major regulator of homeostasis and development. Wiley Interdiscip Rev Syst Biol Med. 2010 Nov-Dec; 2(6):625-39. PMID: 20890961.
        View in: PubMed
      55. Jamali Y, Azimi M, Mofrad M. A sub-cellular viscoelastic model for cell population mechanics. PLoS One. 2010; 5(8). PMID: 20856895.
        View in: PubMed
      56. Golji J, Mofrad M. A molecular dynamics investigation of vinculin activation. Biophys J. 2010 Aug 9; 99(4):1073-81. PMID: 20712990.
        View in: PubMed
      57. Chandran PL, Mofrad M. Averaged implicit hydrodynamic model of semiflexible filaments. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar; 81(3 Pt 1):031920. PMID: 20365783.
        View in: PubMed
      58. Leach JR, Rayz VL, Soares B, Wintermark M, Mofrad M, Saloner D. Carotid atheroma rupture observed in vivo and FSI-predicted stress distribution based on pre-rupture imaging. Ann Biomed Eng. 2010 Aug; 38(8):2748-65. PMID: 20232151.
        View in: PubMed
      59. Bao G, Kamm RD, Thomas W, Hwang W, Fletcher DA, Grodzinsky AJ, Zhu C, Mofrad M. Molecular Biomechanics: The Molecular Basis of How Forces Regulate Cellular Function. Mol Cell Biomech. 2010 Mar 2; 3(2):91-105. PMID: 20700472.
        View in: PubMed
      60. Weinberg EJ, Shahmirzadi D, Mofrad M. On the multiscale modeling of heart valve biomechanics in health and disease. Biomech Model Mechanobiol. 2010 Aug; 9(4):373-87. PMID: 20066464.
        View in: PubMed
      61. Chen HS, Kolahi KS, Mofrad M. Phosphorylation facilitates the integrin binding of filamin under force. Biophys J. 2009 Dec 16; 97(12):3095-104. PMID: 20006946.
        View in: PubMed
      62. Leach JR, Rayz VL, Mofrad M, Saloner D. An efficient two-stage approach for image-based FSI analysis of atherosclerotic arteries. Biomech Model Mechanobiol. 2010 Apr; 9(2):213-23. PMID: 19756798.
        View in: PubMed
      63. Weinberg EJ, Schoen FJ, Mofrad M. A computational model of aging and calcification in the aortic heart valve. PLoS One. 2009; 4(6):e5960. PMID: 19536285.
        View in: PubMed
      64. Golji J, Collins R, Mofrad M. Molecular mechanics of the alpha-actinin rod domain: bending, torsional, and extensional behavior. PLoS Comput Biol. 2009 May; 5(5):e1000389. PMID: 19436721.
        View in: PubMed
      65. Kolahi KS, White PF, Shreter DM, Classen AK, Bilder D, Mofrad M. Quantitative analysis of epithelial morphogenesis in Drosophila oogenesis: New insights based on morphometric analysis and mechanical modeling. Dev Biol. 2009 Jul 15; 331(2):129-39. PMID: 19409378.
        View in: PubMed
      66. Chandran PL, Mofrad M. Rods-on-string idealization captures semiflexible filament dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan; 79(1 Pt 1):011906. PMID: 19257068.
        View in: PubMed
      67. Karimi R, Zhu T, Bouma BE, Mofrad M. Estimation of nonlinear mechanical properties of vascular tissues via elastography. Cardiovasc Eng. 2008 Dec; 8(4):191-202. PMID: 19048372.
        View in: PubMed
      68. Wolf C, Mofrad M. On the octagonal structure of the nuclear pore complex: insights from coarse-grained models. Biophys J. 2008 Aug; 95(4):2073-85. PMID: 18487299.
        View in: PubMed
      69. Lee SE, Chunsrivirot S, Kamm RD, Mofrad M. Molecular dynamics study of talin-vinculin binding. Biophys J. 2008 Aug; 95(4):2027-36. PMID: 18408041.
        View in: PubMed
      70. Mandadapu KK, Govindjee S, Mofrad M. On the cytoskeleton and soft glassy rheology. J Biomech. 2008; 41(7):1467-78. PMID: 18402964.
        View in: PubMed
      71. Kolahi KS, Mofrad M. Molecular mechanics of filamin's rod domain. Biophys J. 2008 Feb 1; 94(3):1075-83. PMID: 17921200.
        View in: PubMed
      72. Lee SE, Kamm RD, Mofrad M. Force-induced activation of talin and its possible role in focal adhesion mechanotransduction. J Biomech. 2007; 40(9):2096-106. PMID: 17544431.
        View in: PubMed
      73. Vaziri A, Mofrad M. Mechanics and deformation of the nucleus in micropipette aspiration experiment. J Biomech. 2007; 40(9):2053-62. PMID: 17112531.
        View in: PubMed
      74. Khalil AS, Chan RC, Chau AH, Bouma BE, Mofrad M. Tissue elasticity estimation with optical coherence elastography: toward mechanical characterization of in vivo soft tissue. Ann Biomed Eng. 2005 Nov; 33(11):1631-9. PMID: 16341928.
        View in: PubMed
      75. Mofrad M, Golji J, Abdul Rahim NA, Kamm RD. Force-induced unfolding of the focal adhesion targeting domain and the influence of paxillin binding. Mech Chem Biosyst. 2004 Dec; 1(4):253-65. PMID: 16783922.
        View in: PubMed
      Mohammad's Networks
      Concepts
      Derived automatically from this person's publications.
      _
      Co-Authors
      People in Profiles who have published with this person.
      _
      Similar People
      People who share similar concepts with this person.
      _
      Same Department

      A U.S. Department of Energy National Laboratory Managed by the University of California

      This site is running Profiles RNS version v2.10.1-414-g6fb82b0a.