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    Grigoriev, Igor

    TitleComputational Biologist Sr SE
    SchoolLawrence Berkeley National Lab
    DepartmentJoint Genome Institute
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone925/296-5860
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Thieme N, Wu VW, Dietschmann A, Salamov AA, Wang M, Johnson J, Singan VR, Grigoriev I, Glass NL, Somerville CR, Benz JP. The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. Biotechnol Biofuels. 2017; 10:149. PMID: 28616073.
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      2. Mujic AB, Kuo A, Tritt A, Lipzen A, Chen C, Johnson J, Sharma A, Barry K, Grigoriev I, Spatafora JW. Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus. G3 (Bethesda). 2017 Jun 07; 7(6):1775-1789. PMID: 28450370.
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      3. Min B, Grigoriev I, Choi IG. FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation. Bioinformatics. 2017 Jun 05. PMID: 28582481.
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      4. Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev I, O'Malley MA. A parts list for fungal cellulosomes revealed by comparative genomics. Nat Microbiol. 2017 May 30; 2:17087. PMID: 28555641.
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      5. Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev I. Widespread adenine N6-methylation of active genes in fungi. Nat Genet. 2017 May 08. PMID: 28481340.
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      6. Xiong Y, Wu VW, Lubbe A, Qin L, Deng S, Kennedy M, Bauer D, Singan VR, Barry K, Northen TR, Grigoriev I, Glass NL. A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PLoS Genet. 2017 May; 13(5):e1006737. PMID: 28467421.
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      7. Peng M, Dilokpimol A, Mäkelä MR, Hildén K, Bervoets S, Riley R, Grigoriev I, Hainaut M, Henrissat B, de Vries RP, Granchi Z. The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi. J Biotechnol. 2017 Feb 16; 246:1-3. PMID: 28216099.
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      8. de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepcic K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev I. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol. 2017 Feb 14; 18(1):28. PMID: 28196534.
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      9. Jiménez DJ, Hector RE, Riley R, Lipzen A, Kuo RC, Amirebrahimi M, Barry KW, Grigoriev I, van Elsas JD, Nichols NN. Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates. Genome Announc. 2017 Jan 26; 5(4). PMID: 28126934.
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      10. Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev I. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 2017 Jan 16; 1-5. PMID: 28092920.
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      11. Wu W, Davis RW, Tran-Gyamfi MB, Kuo A, LaButti K, Mihaltcheva S, Hundley H, Chovatia M, Lindquist E, Barry K, Grigoriev I, Henrissat B, Gladden JM. Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels. Appl Microbiol Biotechnol. 2017 Jan 12. PMID: 28078400.
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      12. Doré J, Kohler A, Dubost A, Hundley H, Singan V, Peng Y, Kuo A, Grigoriev I, Martin F, Marmeisse R, Gay AG. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environ Microbiol. 2017 Jan 11. PMID: 28076886.
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      13. Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, Henrissat B, Ohm R, Kuo A, Yan J, Lipzen A, Nolan M, LaButti K, Barry K, Goldstein AH, Labbé J, Schadt C, Tuskan G, Grigoriev I, Martin F, Vilgalys R, Bonito G. Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environ Microbiol. 2017 Jan 11. PMID: 28076891.
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      14. Rineau F, Lmalem H, Ahren D, Shah F, Johansson T, Coninx L, Ruytinx J, Nguyen H, Grigoriev I, Kuo A, Kohler A, Morin E, Vangronsveld J, Martin F, Colpaert JV. Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes. Mycorrhiza. 2017 Jan 09. PMID: 28066872.
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      15. Lastovetsky OA, Gaspar ML, Mondo SJ, LaButti KM, Sandor L, Grigoriev I, Henry SA, Pawlowska TE. Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proc Natl Acad Sci U S A. 2016 Dec 12. PMID: 27956601.
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      16. Robicheau BM, Young AP, LaButti K, Grigoriev I, Walker AK. The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. - Acephala appalanata species complex. Fungal Biol. 2017 Mar; 121(3):212-221. PMID: 28215349.
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      17. Fochi V, Chitarra W, Kohler A, Voyron S, Singan VR, Lindquist EA, Barry KW, Girlanda M, Grigoriev I, Martin F, Balestrini R, Perotto S. Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. New Phytol. 2016 Nov 11. PMID: 27859287.
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      18. Nagy LG, Riley R, Bergmann PJ, Krizsán K, Martin FM, Grigoriev I, Cullen D, Hibbett DS. Genetic bases of fungal white rot wood decay predicted by phylogenomic analysis of correlated gene-phenotype evolution. Mol Biol Evol. 2016 Nov 10. PMID: 27834665.
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      19. Miettinen O, Riley R, Barry K, Cullen D, de Vries RP, Hainaut M, Hatakka A, Henrissat B, Hildén K, Kuo R, LaButti K, Lipzen A, Mäkelä MR, Sandor L, Spatafora JW, Grigoriev I, Hibbett DS. Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announc. 2016; 4(5). PMID: 27634999.
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      20. Peter M, Kohler A, Ohm RA, Kuo A, Krützmann J, Morin E, Arend M, Barry KW, Binder M, Choi C, Clum A, Copeland A, Grisel N, Haridas S, Kipfer T, LaButti K, Lindquist E, Lipzen A, Maire R, Meier B, Mihaltcheva S, Molinier V, Murat C, Pöggeler S, Quandt CA, Sperisen C, Tritt A, Tisserant E, Crous PW, Henrissat B, Nehls U, Egli S, Spatafora JW, Grigoriev I, Martin FM. Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nat Commun. 2016; 7:12662. PMID: 27601008.
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      21. Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 2016 Sep; 108(5):1028-1046. PMID: 27738200.
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      22. Miyauchi S, Navarro D, Grigoriev I, Lipzen A, Riley R, Chevret D, Grisel S, Berrin JG, Henrissat B, Rosso MN. Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front Microbiol. 2016; 7:1335. PMID: 27605927.
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      23. Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev I, Jeffries TW. Comparative genomics of biotechnologically important yeasts. Proc Natl Acad Sci U S A. 2016 Aug 30; 113(35):9882-7. PMID: 27535936.
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      24. Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, Mehrabi R, Quiros O, Schmutz J, Shapiro H, Reynolds E, Scalliet G, Souza M, Stergiopoulos I, Van der Lee TA, De Wit PJ, Zapater MF, Zwiers LH, Grigoriev I, Goodwin SB, Kema GH. Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. PLoS Genet. 2016 Aug; 12(8):e1005876. PMID: 27512984.
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      25. Zeiner CA, Purvine SO, Zink EM, Paša-Tolic L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev I, Henrissat B, Santelli CM, Hansel CM. Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi. PLoS One. 2016; 11(7):e0157844. PMID: 27434633.
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      26. Castanera R, López-Varas L, Borgognone A, LaButti K, Lapidus A, Schmutz J, Grimwood J, Pérez G, Pisabarro AG, Grigoriev I, Stajich JE, Ramírez L. Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS Genet. 2016 Jun; 12(6):e1006108. PMID: 27294409.
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      27. Alfaro M, Castanera R, Lavín JL, Grigoriev I, Oguiza JA, Ramírez L, Pisabarro AG. Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus. Environ Microbiol. 2016 Dec; 18(12):4710-4726. PMID: 27117896.
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      28. Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev I. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol. 2016 Jun 20; 26(12):1577-84. PMID: 27238284.
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      29. Walker AK, Frasz SL, Seifert KA, Miller JD, Mondo SJ, LaButti K, Lipzen A, Dockter RB, Kennedy MC, Grigoriev I, Spatafora JW. Erratum for Walker et al., Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin. Genome Announc. 2016; 4(3). PMID: 27231381.
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      30. Goodwin SB, McCorison CB, Cavaletto JR, Culley DE, LaButti K, Baker SE, Grigoriev I. The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. Fungal Biol. 2016 Aug; 120(8):961-74. PMID: 27521628.
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      31. David AS, Haridas S, LaButti K, Lim J, Lipzen A, Wang M, Barry K, Grigoriev I, Spatafora JW, May G. Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc. 2016; 4(2). PMID: 27125481.
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      32. van Baren MJ, Bachy C, Reistetter EN, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev I, Wong CH, Smith RD, Callister SJ, Wei CL, Schmutz J, Worden AZ. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics. 2016; 17(1):267. PMID: 27029936.
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      33. Goordial J, Raymond-Bouchard I, Riley R, Ronholm J, Shapiro N, Woyke T, LaButti KM, Tice H, Amirebrahimi M, Grigoriev I, Greer C, Bakermans C, Whyte L. Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica. Genome Announc. 2016; 4(2). PMID: 26988035.
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      34. Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev I, Singer SW, Banfield JF. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Front Microbiol. 2016; 7:238. PMID: 26973616.
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      35. Walker AK, Frasz SL, Seifert KA, Miller JD, Mondo SJ, LaButti K, Lipzen A, Dockter RB, Kennedy MC, Grigoriev I, Spatafora JW. Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin. Genome Announc. 2016; 4(1). PMID: 26950333.
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      36. Solomon KV, Haitjema CH, Henske JK, Gilmore SP, Borges-Rivera D, Lipzen A, Brewer HM, Purvine SO, Wright AT, Theodorou MK, Grigoriev I, Regev A, Thompson DA, O'Malley MA. Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes. Science. 2016 Mar 11; 351(6278):1192-5. PMID: 26912365.
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      37. de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev I, Collemare J, Bradshaw RE. Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry. PLoS Genet. 2015 Dec; 11(12):e1005775. PMID: 26694319.
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      38. Couturier M, Navarro D, Chevret D, Henrissat B, Piumi F, Ruiz-Dueñas FJ, Martinez AT, Grigoriev I, Riley R, Lipzen A, Berrin JG, Master ER, Rosso MN. Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels. 2015; 8:216. PMID: 26692083.
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      39. Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, Labutti K, Kuo R, Ohm RA, Bhattacharya SS, Shirouzu T, Yoshinaga Y, Martin FM, Grigoriev I, Hibbett DS. Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities. Mol Biol Evol. 2016 Apr; 33(4):959-70. PMID: 26659563.
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      40. Hutchinson MI, Powell AJ, Tsang A, O'Toole N, Berka RM, Barry K, Grigoriev I, Natvig DO. Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. Fungal Genet Biol. 2016 Jan; 86:9-19. PMID: 26608618.
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      41. Zhou K, Salamov A, Kuo A, Aerts AL, Kong X, Grigoriev I. Alternative splicing acting as a bridge in evolution. Stem Cell Investig. 2015; 2:19. PMID: 27358887.
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      42. Muraguchi H, Umezawa K, Niikura M, Yoshida M, Kozaki T, Ishii K, Sakai K, Shimizu M, Nakahori K, Sakamoto Y, Choi C, Ngan CY, Lindquist E, Lipzen A, Tritt A, Haridas S, Barry K, Grigoriev I, Pukkila PJ. Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea. PLoS One. 2015; 10(10):e0141586. PMID: 26510163.
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      43. Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev I, Hibbett DS. The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol. 2016 Jan; 120(1):26-42. PMID: 26693682.
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      44. Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev I, Baker SE, Margeot A, Seiboth B, Kubicek CP. Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics. 2015; 16(1):725. PMID: 26395946.
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      45. Firrincieli A, Otillar R, Salamov A, Schmutz J, Khan Z, Redman RS, Fleck ND, Lindquist E, Grigoriev I, Doty SL. Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1. Front Microbiol. 2015; 6:978. PMID: 26441909.
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      46. Kourist R, Bracharz F, Lorenzen J, Kracht ON, Chovatia M, Daum C, Deshpande S, Lipzen A, Nolan M, Ohm RA, Grigoriev I, Sun S, Heitman J, Brück T, Nowrousian M. Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. MBio. 2015; 6(4). PMID: 26199329.
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      47. Min B, Park H, Jang Y, Kim JJ, Kim KH, Pangilinan J, Lipzen A, Riley R, Grigoriev I, Spatafora JW, Choi IG. Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. J Biotechnol. 2015 Oct 10; 211:42-3. PMID: 26188242.
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      48. Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev I, Figueroa M, Schilling JS, Chen F, Wang Z. Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing. PLoS One. 2015; 10(7):e0132628. PMID: 26177194.
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      49. Doré J, Perraud M, Dieryckx C, Kohler A, Morin E, Henrissat B, Lindquist E, Zimmermann SD, Girard V, Kuo A, Grigoriev I, Martin F, Marmeisse R, Gay G. Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. New Phytol. 2015 Dec; 208(4):1169-87. PMID: 26171947.
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      50. Young D, Rice J, Martin R, Lindquist E, Lipzen A, Grigoriev I, Hibbett D. Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation. PLoS One. 2015; 10(6):e0130381. PMID: 26111162.
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      51. Chang Y, Wang S, Sekimoto S, Aerts AL, Choi C, Clum A, LaButti KM, Lindquist EA, Yee Ngan C, Ohm RA, Salamov AA, Grigoriev I, Spatafora JW, Berbee ML. Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. Genome Biol Evol. 2015; 7(6):1590-601. PMID: 25977457.
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      52. Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev I, Baker SE, Margeot A, Seiboth B, Kubicek CP. Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics. 2015; 16(1):326. PMID: 25909478.
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      53. Baker SE, Schackwitz W, Lipzen A, Martin J, Haridas S, LaButti K, Grigoriev I, Simmons BA, McCluskey K. Draft Genome Sequence of Neurospora crassa Strain FGSC 73. Genome Announc. 2015; 3(2). PMID: 25838471.
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      54. Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev I, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Genetic isolation between two recently diverged populations of a symbiotic fungus. Mol Ecol. 2015 Jun; 24(11):2747-58. PMID: 25728665.
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