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    Holman, Hoi-Ying

    TitleChemist Senior Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentClimate & Ecosystems
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-5943
    vCardDownload vCard

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Moissl-Eichinger C, Probst AJ, Birarda G, Auerbach A, Koskinen K, Wolf P, Holman H. Human age and skin physiology shape diversity and abundance of Archaea on skin. Sci Rep. 2017 Jun 22; 7(1):4039. PMID: 28642547.
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      2. Birarda G, Ravasio A, Suryana M, Maniam S, Holman H, Grenci G. IR-Live: fabrication of a low-cost plastic microfluidic device for infrared spectromicroscopy of living cells. Lab Chip. 2016 Apr 26; 16(9):1644-51. PMID: 27040369.
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      3. Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman H, Gilbert B, Silver WL, Northen TR, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Front Microbiol. 2016; 7:323. PMID: 27014243.
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      4. Loutherback K, Birarda G, Chen L, Holman H. Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems. Protein Pept Lett. 2016; 23(3):273-82. PMID: 26732243.
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      5. Smith-Moritz AM, Hao Z, Fernández-Niño SG, Fangel JU, Verhertbruggen Y, Holman H, Willats WG, Ronald PC, Scheller HV, Heazlewood JL, Vega-Sánchez ME. Structural characterization of a mixed-linkage glucan deficient mutant reveals alteration in cellulose microfibril orientation in rice coleoptile mesophyll cell walls. Front Plant Sci. 2015; 6:628. PMID: 26347754.
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      6. Cohen MF, Gurung S, Birarda G, Holman H, Yamasaki H. Bimodal effect of hydrogen peroxide and oxidative events in nitrite-induced rapid root abscission by the water fern Azolla pinnata. Front Plant Sci. 2015; 6:518. PMID: 26217368.
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      7. Cohen MF, Hu P, Nguyen MV, Kamennaya N, Brown N, Woyke T, Kyrpides N, Holman H, Torok T. Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1. Genome Announc. 2015; 3(3). PMID: 26089422.
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      8. Loutherback K, Chen L, Holman H. Open-Channel Microfluidic Membrane Device for Long-Term FT-IR Spectromicroscopy of Live Adherent Cells. Anal Chem. 2015 May 5; 87(9):4601-6. PMID: 25886198.
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      9. Kamennaya NA, Ahn S, Park H, Bartal R, Sasaki KA, Holman H, Jansson C. Installing extra bicarbonate transporters in the cyanobacterium Synechocystis sp. PCC6803 enhances biomass production. Metab Eng. 2015 May; 29:76-85. PMID: 25769289.
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      10. Luef B, Frischkorn KR, Wrighton KC, Holman H, Birarda G, Thomas BC, Singh A, Williams KH, Siegerist CE, Tringe SG, Downing KH, Comolli LR, Banfield JF. Diverse uncultivated ultra-small bacterial cells in groundwater. Nat Commun. 2015; 6:6372. PMID: 25721682.
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      11. O'Brien JT, Williams ER, Holman H. Ambient Infrared Laser Ablation Mass Spectrometry (AIRLAB-MS) of Live Plant Tissue with Plume Capture by Continuous Flow Solvent Probe. Anal Chem. 2015 Mar 3; 87(5):2631-8. PMID: 25622206.
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      12. Probst AJ, Birarda G, Holman H, DeSantis TZ, Wanner G, Andersen GL, Perras AK, Meck S, Völkel J, Bechtel HA, Wirth R, Moissl-Eichinger C. Coupling genetic and chemical microbiome profiling reveals heterogeneity of archaeome and bacteriome in subsurface biofilms that are dominated by the same archaeal species. PLoS One. 2014; 9(6):e99801. PMID: 24971452.
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      13. Birarda G, Holman EA, Fu S, Weikel K, Hu P, Blankenberg FG, Holman H, Taylor A. Synchrotron infrared imaging of advanced glycation endproducts (AGEs) in cardiac tissue from mice fed high glycemic diets. Biomed Spectrosc Imaging. 2013; 2(4):301-315. PMID: 26500847.
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      14. Probst AJ, Holman H, DeSantis TZ, Andersen GL, Birarda G, Bechtel HA, Piceno YM, Sonnleitner M, Venkateswaran K, Moissl-Eichinger C. Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME J. 2013 Mar; 7(3):635-51. PMID: 23178669.
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      15. Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman H, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 2012 Sep; 6(9):1715-27. PMID: 22717885.
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      16. Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman H, Hazen TC, Jansson JK. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol. 2012 Sep; 14(9):2405-16. PMID: 22616650.
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      17. Chen L, Holman H, Hao Z, Bechtel HA, Martin MC, Wu C, Chu S. Synchrotron infrared measurements of protein phosphorylation in living single PC12 cells during neuronal differentiation. Anal Chem. 2012 May 1; 84(9):4118-25. PMID: 22468902.
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      18. Tsibakhashvili NY, Kalabegishvili TL, Rcheulishvili AN, Gintury EN, Lomidze LG, Gvarjaladze DN, Rcheulishvili OA, Holman H. Effect of Zn(II) on the reduction and accumulation of Cr(VI) by Arthrobacter species. J Ind Microbiol Biotechnol. 2011 Nov; 38(11):1803-8. PMID: 21547698.
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      19. Holman H, Bechtel HA, Hao Z, Martin MC. Synchrotron IR spectromicroscopy: chemistry of living cells. Anal Chem. 2010 Nov 1; 82(21):8757-65. PMID: 20839782.
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      20. Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman H, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science. 2010 Oct 8; 330(6001):204-8. PMID: 20736401.
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      21. Lacayo CI, Malkin AJ, Holman H, Chen L, Ding SY, Hwang MS, Thelen MP. Imaging cell wall architecture in single Zinnia elegans tracheary elements. Plant Physiol. 2010 Sep; 154(1):121-33. PMID: 20592039.
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      22. Choi S, Park I, Hao Z, Holman H, Pisano AP, Zohdi TI. Ultrafast self-assembly of microscale particles by open-channel flow. Langmuir. 2010 Apr 6; 26(7):4661-7. PMID: 19921822.
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      23. Asatiani N, Abuladze M, Kartvelishvili T, Kulikova N, Asanishvili L, Holman H, Sapojnikova N. Response of antioxidant defense system to chromium (VI)-induced cytotoxicity in human diploid cells. Biometals. 2010 Feb; 23(1):161-72. PMID: 19915997.
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      24. Holman H, Miles R, Hao Z, Wozei E, Anderson LM, Yang H. Real-time chemical imaging of bacterial activity in biofilms using open-channel microfluidics and synchrotron FTIR spectromicroscopy. Anal Chem. 2009 Oct 15; 81(20):8564-70. PMID: 19775125.
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      25. Holman H, Wozei E, Lin Z, Comolli LR, Ball DA, Borglin S, Fields MW, Hazen TC, Downing KH. Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response. Proc Natl Acad Sci U S A. 2009 Aug 4; 106(31):12599-604. PMID: 19541631.
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      26. Tsibakhashvili NY, Kalabegishvili TL, Rcheulishvili AN, Murusidze IG, Rcheulishvili OA, Kerkenjia SM, Holman H. Decomposition of Cr(V)-diols to Cr(III) complexes by Arthrobacter oxydans. Microb Ecol. 2009 Feb; 57(2):360-6. PMID: 19067030.
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      27. Holman H, Bjornstad KA, Martin MC, McKinney WR, Blakely EA, Blankenberg FG. Mid-infrared reflectivity of experimental atheromas. J Biomed Opt. 2008 May-Jun; 13(3):030503. PMID: 18601520.
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      28. Yang C, Cheng Y, Ma X, Zhu Y, Holman H, Lin Z, Wang C. Surface-mediated chromate-resistant mechanism of Enterobacter cloacae bacteria investigated by atomic force microscopy. Langmuir. 2007 Apr 10; 23(8):4480-5. PMID: 17371056.
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      29. Tsibakhashvili NY, Frontasyeva MV, Kirkesali EI, Aksenova NG, Kalabegishvili TL, Murusidze IG, Mosulishvili LM, Holman H. Epithermal neutron activation analysis of Cr(VI)-reducer basalt-inhabiting bacteria. Anal Chem. 2006 Sep 15; 78(18):6285-90. PMID: 16970299.
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      30. Codd R, Lay PA, Tsibakhashvili NY, Kalabegishvili TL, Murusidze IG, Holman H. Chromium(V) complexes generated in Arthrobacter oxydans by simulation analysis of EPR spectra. J Inorg Biochem. 2006 Nov; 100(11):1827-33. PMID: 16959323.
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      31. Woods KN, Lee SA, Holman H, Wiedemann H. The effect of solvent dynamics on the low frequency collective motions of DNA in solution and unoriented films. J Chem Phys. 2006 Jun 14; 124(22):224706. PMID: 16784300.
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      32. Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman H, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD. Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol. 2006 Jun; 188(11):4068-78. PMID: 16707698.
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      33. Wozei E, Hermanowicz SW, Holman H. Developing a biosensor for estrogens in water samples: study of the real-time response of live cells of the estrogen-sensitive yeast strain RMY/ER-ERE using fluorescence microscopy. Biosens Bioelectron. 2006 Feb 15; 21(8):1654-8. PMID: 16143503.
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      34. Stroo HF, Nakles DV, Kreitinger JP, Loehr RC, Hawthorne SB, Luthy RG, Holman H, LaPierre A. Improving risk assessments for manufactured gas plant soils by measuring PAH availability. Integr Environ Assess Manag. 2005 Jul; 1(3):259-66. PMID: 16639887.
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      35. Asatiani NV, Abuladze MK, Kartvelishvili TM, Bakradze NG, Sapojnikova NA, Tsibakhashvili NY, Tabatadze LV, Lejava LV, Asanishvili LL, Holman H. Effect of chromium(VI) action on Arthrobacter oxydans. Curr Microbiol. 2004 Nov; 49(5):321-6. PMID: 15486705.
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      36. Kartvelishvili T, Abuladze M, Asatiani N, Akhvlediani J, Kiziria E, Asanishvili L, Lejava L, Holman H, Sapojnikova N. Estimation of the cellular antioxidant response to chromium action using ESR method. ScientificWorldJournal. 2004 Sep 2; 4:785-94. PMID: 15349518.
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      37. Kartvelishvili T, Abuladze M, Asatiani N, Akhvlediani J, Asanishvili L, Holman H, Sapojnikova N. Antioxidant capacity of cultured mammalian cells estimated by ESR method. ScientificWorldJournal. 2004 Jun 29; 4:490-9. PMID: 15258675.
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      38. Asatiani N, Sapojnikova N, Abuladze M, Kartvelishvili T, Kulikova N, Kiziria E, Namchevadze E, Holman H. Effects of Cr(VI) long-term and low-dose action on mammalian antioxidant enzymes (an in vitro study). J Inorg Biochem. 2004 Mar; 98(3):490-6. PMID: 14987850.
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      39. Kalabegishvili TL, Tsibakhashvili NY, Holman H. Electron spin resonance study of chromium(V) formation and decomposition by basalt-inhabiting bacteria. Environ Sci Technol. 2003 Oct 15; 37(20):4678-84. PMID: 14594378.
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      40. Holman H, Martin MC, McKinney WR. Synchrotron-Based FTIR Spectromicroscopy: Cytotoxicity and Heating Considerations. J Biol Phys. 2003 Jun; 29(2-3):275-86. PMID: 23345845.
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      41. Bakradze NG, Abuladze MK, Sokhadze VM, Asatiani NV, Sapojnikova NA, Kartvelishvili TM, Namchevadze EN, Tsibakhashvili NY, Tabatadze LV, Lejava LV, Holman H. A calorimetric characterization of Cr(VI)-reducing Arthrobacter oxydans at different phases of the cell growth cycle. ScientificWorldJournal. 2003 May 28; 3:432-42. PMID: 12806104.
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      42. Tsibakhashvili NY, Asatiani NV, Abuladze MK, Birkaya BG, Sapojnikova NA, Mosulishvili LM, Holman H. Capillary electrophoresis of Cr(VI) reducer Arthrobacter oxydans. Biomed Chromatogr. 2002 Aug; 16(5):327-31. PMID: 12210506.
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      43. Holman H, Bjornstad KA, McNamara MP, Martin MC, McKinney WR, Blakely EA. Synchrotron infrared spectromicroscopy as a novel bioanalytical microprobe for individual living cells: cytotoxicity considerations. J Biomed Opt. 2002 Jul; 7(3):417-24. PMID: 12175292.
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      44. Holman H, Nieman K, Sorensen DL, Miller CD, Martin MC, Borch T, Mckinney WR, Sims RC. Catalysis of PAH biodegradation by humic acid shown in synchrotron infrared studies. Environ Sci Technol. 2002 Mar 15; 36(6):1276-80. PMID: 11944680.
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      45. Holman H, Goth-Goldstein R, Aston D, Yun M, Kengsoontra J. Evaluation of gastrointestinal solubilization of petroleum hydrocarbon residues in soil using an in vitro physiologically based model. Environ Sci Technol. 2002 Mar 15; 36(6):1281-6. PMID: 11944681.
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      46. Bhupathiraju VK, Krauter P, Holman H, Conrad ME, Daley PF, Templeto AS, Hunt JR, Hernandez M, Alvarez-Cohen L. Assessment of in-situ bioremediation at a refinery waste-contaminated site and an aviation gasoline contaminated site. Biodegradation. 2002; 13(2):79-90. PMID: 12449311.
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      47. Holman H, Martin MC, Blakely EA, Bjornstad K, McKinney WR. IR spectroscopic characteristics of cell cycle and cell death probed by synchrotron radiation based Fourier transform IR spectromicroscopy. Biopolymers. 2000; 57(6):329-35. PMID: 11054652.
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