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    Oberortner, Ernst

    TitleSoftware Developer 3
    SchoolLawrence Berkeley National Lab
    DepartmentJoint Genome Institute
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone925/296-5874
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Myers CJ, Beal J, Gorochowski TE, Kuwahara H, Madsen C, McLaughlin JA, Misirli G, Nguyen T, Oberortner E, Samineni M, Wipat A, Zhang M, Zundel Z. A standard-enabled workflow for synthetic biology. Biochem Soc Trans. 2017 Jun 15; 45(3):793-803. PMID: 28620041.
        View in: PubMed
      2. Oberortner E, Cheng JF, Hillson NJ, Deutsch S. Streamlining the Design-to-Build Transition with Build-Optimization Software Tools. ACS Synth Biol. 2016 Dec 22. PMID: 28004921.
        View in: PubMed
      3. Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari J, Myers C, Sauro H, Wipat A. Synthetic Biology Open Language (SBOL) Version 2.1.0. J Integr Bioinform. 2016 Dec 18; 13(3):291. PMID: 28187407.
        View in: PubMed
      4. Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ. Sharing Structure and Function in Biological Design with SBOL 2.0. ACS Synth Biol. 2016 Jun 17; 5(6):498-506. PMID: 27111421.
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      5. Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Synthetic Biology Open Language (SBOL) Version 2.0.0. J Integr Bioinform. 2015; 12(2):272. PMID: 26528570.
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      6. Myers C, Clancy K, Misirli G, Oberortner E, Pocock M, Quinn J, Roehner N, Sauro HM. The synthetic biology open language. Methods Mol Biol. 2015; 1244:323-36. PMID: 25487105.
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      7. Oberortner E, Densmore D. Web-based software tool for constraint-based design specification of synthetic biological systems. ACS Synth Biol. 2015 Jun 19; 4(6):757-60. PMID: 25426642.
        View in: PubMed
      8. Roehner N, Oberortner E, Pocock M, Beal J, Clancy K, Madsen C, Misirli G, Wipat A, Sauro H, Myers CJ. Proposed data model for the next version of the synthetic biology open language. ACS Synth Biol. 2015 Jan 16; 4(1):57-71. PMID: 24896221.
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      9. Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nat Biotechnol. 2014 Jun; 32(6):545-50. PMID: 24911500.
        View in: PubMed
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