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    Herr, Amy

    TitleBiological Faculty Engineer
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/666-3396
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Sinkala E, Sollier-Christen E, Renier C, Rosàs-Canyelles E, Che J, Heirich K, Duncombe TA, Vlassakis J, Yamauchi KA, Huang H, Jeffrey SS, Herr A. Profiling protein expression in circulating tumour cells using microfluidic western blotting. Nat Commun. 2017 Mar 23; 8:14622. PMID: 28332571.
        View in: PubMed
      2. Kim JJ, Sinkala E, Herr A. High-selectivity cytology via lab-on-a-disc western blotting of individual cells. Lab Chip. 2017 Feb 06. PMID: 28165521.
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      3. Pan Y, Sackmann EK, Wypisniak K, Hornsby M, Datwani SS, Herr A. Determination of equilibrium dissociation constants for recombinant antibodies by high-throughput affinity electrophoresis. Sci Rep. 2016 Dec 23; 6:39774. PMID: 28008969.
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      4. Tentori AM, Yamauchi KA, Herr A. Corrigendum: Detection of Isoforms Differing by a Single Charge Unit in Individual Cells. Angew Chem Int Ed Engl. 2016 Dec 5; 55(49):15200. PMID: 27897425.
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      5. Tentori AM, Yamauchi KA, Herr A. Detection of Isoforms Differing by a Single Charge Unit in Individual Cells. Angew Chem Int Ed Engl. 2016 Sep 26; 55(40):12431-5. PMID: 27595864.
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      6. Kang CC, Yamauchi KA, Vlassakis J, Sinkala E, Duncombe TA, Herr A. Single cell-resolution western blotting. Nat Protoc. 2016 Aug; 11(8):1508-30. PMID: 27466711.
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      7. Kapil MA, Pan Y, Duncombe TA, Herr A. Kinetic Rate Determination via Electrophoresis along a Varying Cross-Section Microchannel. Anal Chem. 2016 Apr 5; 88(7):3669-76. PMID: 26963604.
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      8. Vlassakis J, Herr A. Effect of Polymer Hydration State on In-Gel Immunoassays. Anal Chem. 2015 Nov 3; 87(21):11030-8. PMID: 26457450.
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      9. Duncombe TA, Tentori AM, Herr A. Microfluidics: reframing biological enquiry. Nat Rev Mol Cell Biol. 2015 Aug 21; 16(9):554-67. PMID: 26296163.
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      10. Kellenberger CA, Sales-Lee J, Pan Y, Gassaway MM, Herr A, Hammond MC. A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer. RNA Biol. 2015 Nov 2; 12(11):1189-97. PMID: 26114964.
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      11. Lin R, Skandarajah A, Gerver RE, Neira HD, Fletcher DA, Herr A. A lateral electrophoretic flow diagnostic assay. Lab Chip. 2015 Mar 3; 15(6):1488-96. PMID: 25608872.
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      12. Sinkala E, Herr A. Single-Cell Western Blotting. Methods Mol Biol. 2015; 1346:1-9. PMID: 26542711.
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      13. Chung M, Kim D, Herr A. Polymer sieving matrices in microanalytical electrophoresis. Analyst. 2014 Oct 15; 139(22):5635-54. PMID: 25195612.
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      14. Gerver RE, Herr A. Microfluidic Western blotting of low-molecular-mass proteins. Anal Chem. 2014 Nov 4; 86(21):10625-32. PMID: 25268977.
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      15. Pan Y, Duncombe TA, Kellenberger CA, Hammond MC, Herr A. High-throughput electrophoretic mobility shift assays for quantitative analysis of molecular binding reactions. Anal Chem. 2014 Oct 21; 86(20):10357-64. PMID: 25233437.
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      16. Kang CC, Lin JM, Xu Z, Kumar S, Herr A. Single-cell Western blotting after whole-cell imaging to assess cancer chemotherapeutic response. Anal Chem. 2014 Oct 21; 86(20):10429-36. PMID: 25226230.
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      17. Hughes AJ, Spelke DP, Xu Z, Kang CC, Schaffer DV, Herr A. Single-cell western blotting. Nat Methods. 2014 Jul; 11(7):749-55. PMID: 24880876.
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      18. Pan Y, Karns K, Herr A. Microfluidic electrophoretic mobility shift assays for quantitative biochemical analysis. Electrophoresis. 2014 Aug; 35(15):2078-90. PMID: 24591076.
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      19. Tentori AM, Herr A. Performance implications of chemical mobilization after microchannel IEF. Electrophoresis. 2014 May; 35(10):1453-60. PMID: 24590929.
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      20. Kapil MA, Herr A. Binding Kinetic Rates Measured via Electrophoretic Band Crossing in a Pseudohomogeneous Format. Anal Chem. 2014 Mar 4; 86(5):2601-9. PMID: 24552202.
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      21. Araz MK, Apori AA, Salisbury CM, Herr A. Microfluidic barcode assay for antibody-based confirmatory diagnostics. Lab Chip. 2013 Oct 7; 13(19):3910-20. PMID: 23925585.
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      22. Herr A. Disruptive by design: a perspective on engineering in analytical chemistry. Anal Chem. 2013 Aug 20; 85(16):7622-8. PMID: 23924345.
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      23. Chung M, Kim D, Herr A. Microchamber Western blotting using poly-L-lysine conjugated polyacrylamide gel for blotting of sodium dodecyl sulfate coated proteins. Anal Chem. 2013 Aug 20; 85(16):7753-61. PMID: 23848185.
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      24. Kim D, Herr A. Protein immobilization techniques for microfluidic assays. Biomicrofluidics. 2013; 7(4):41501. PMID: 24003344.
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      25. Araz MK, Tentori AM, Herr A. Microfluidic multiplexing in bioanalyses. J Lab Autom. 2013 Oct; 18(5):350-66. PMID: 23757343.
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      26. Duncombe TA, Herr A. Photopatterned free-standing polyacrylamide gels for microfluidic protein electrophoresis. Lab Chip. 2013 Jun 7; 13(11):2115-23. PMID: 23609800.
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      27. Tentori AM, Hughes AJ, Herr A. Microchamber integration unifies distinct separation modes for two-dimensional electrophoresis. Anal Chem. 2013 May 7; 85(9):4538-45. PMID: 23565932.
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      28. Tia SQ, Brown K, Chen D, Herr A. Protein post-translational modification analyses using on-chip immunoprobed isoelectric focusing. Anal Chem. 2013 Mar 5; 85(5):2882-90. PMID: 23363036.
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      29. Apori AA, Brozynski MN, El-Sayed IH, Herr A. Microfluidic validation of diagnostic protein markers for spontaneous cerebrospinal fluid rhinorrhea. J Proteome Res. 2013 Mar 1; 12(3):1254-65. PMID: 23343621.
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      30. Karns K, Vogan JM, Qin Q, Hickey SF, Wilson SC, Hammond MC, Herr A. Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function. J Am Chem Soc. 2013 Feb 27; 135(8):3136-43. PMID: 23343213.
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      31. Apori AA, Herr A. Chip-based immunoassays. Methods Mol Biol. 2013; 919:233-48. PMID: 22976105.
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      32. Hughes AJ, Herr A. Microfluidic Western blotting. Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52):21450-5. PMID: 23223527.
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      33. Wheeler AR, Herr A. Mission impossible to mission control. Lab Chip. 2012 Oct 21; 12(20):3851-2. PMID: 22960855.
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      34. Hughes AJ, Tentori AM, Herr A. Bistable isoelectric point photoswitching in green fluorescent proteins observed by dynamic immunoprobed isoelectric focusing. J Am Chem Soc. 2012 Oct 24; 134(42):17582-91. PMID: 23017083.
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      35. Hou C, Herr A. Microfluidic integration of Western blotting is enabled by electrotransfer-assisted sodium dodecyl sulfate dilution. Analyst. 2013 Jan 7; 138(1):158-63. PMID: 23042290.
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      36. Duncombe TA, Herr A. Use of polyacrylamide gel moving boundary electrophoresis to enable low-power protein analysis in a compact microdevice. Anal Chem. 2012 Oct 16; 84(20):8740-7. PMID: 22971048.
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      37. Denisin AK, Karns K, Herr A. Post-collection processing of Schirmer strip-collected human tear fluid impacts protein content. Analyst. 2012 Nov 7; 137(21):5088-96. PMID: 22991688.
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      38. Hughes AJ, Lin RK, Peehl DM, Herr A. Microfluidic integration for automated targeted proteomic assays. Proc Natl Acad Sci U S A. 2012 Apr 17; 109(16):5972-7. PMID: 22474344.
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      39. Kim D, Karns K, Tia SQ, He M, Herr A. Electrostatic protein immobilization using charged polyacrylamide gels and cationic detergent microfluidic Western blotting. Anal Chem. 2012 Mar 6; 84(5):2533-40. PMID: 22304398.
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      40. He M, Novak J, Julian BA, Herr A. Membrane-assisted online renaturation for automated microfluidic lectin blotting. J Am Chem Soc. 2011 Dec 14; 133(49):19610-3. PMID: 22070432.
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      41. Karns K, Herr A. Microfluidic homo- and hetero-geneous immunoassays: a tool to accelerate protein biomarker development. Bioanalysis. 2011 Oct; 3(19):2161-5. PMID: 21985410.
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      42. Karns K, Herr A. Human tear protein analysis enabled by an alkaline microfluidic homogeneous immunoassay. Anal Chem. 2011 Nov 1; 83(21):8115-22. PMID: 21910436.
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      43. Chen X, Kapil MA, Hughes AJ, Herr A. Single-microchannel, multistep assay reports protein size and immunoaffinity. Anal Chem. 2011 Sep 1; 83(17):6573-9. PMID: 21834519.
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      44. Tentori AM, Herr A. Photopatterned materials in bioanalytical microfluidic technology. J Micromech Microeng. 2011 May 1; 21(5):54001. PMID: 21857772.
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      45. Tia SQ, He M, Kim D, Herr A. Multianalyte on-chip native Western blotting. Anal Chem. 2011 May 1; 83(9):3581-8. PMID: 21456518.
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      46. Kinney JS, Morelli T, Braun T, Ramseier CA, Herr A, Sugai JV, Shelburne CE, Rayburn LA, Singh AK, Giannobile WV. Saliva/pathogen biomarker signatures and periodontal disease progression. J Dent Res. 2011 Jun; 90(6):752-8. PMID: 21406610.
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      47. Apori AA, Herr A. Homogeneous immunosubtraction integrated with sample preparation enabled by a microfluidic format. Anal Chem. 2011 Apr 1; 83(7):2691-8. PMID: 21375345.
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      48. He M, Herr A. Automated microfluidic protein immunoblotting. Nat Protoc. 2010 Nov; 5(11):1844-56. PMID: 21030959.
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      49. Wheeler A, Herr A. Intimidating yet inspiring: emerging investigators special issue. Lab Chip. 2010 Sep 21; 10(18):2321-2. PMID: 20730140.
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      50. Hughes AJ, Herr A. Quantitative enzyme activity determination with zeptomole sensitivity by microfluidic gradient-gel zymography. Anal Chem. 2010 May 1; 82(9):3803-11. PMID: 20353191.
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      51. Hou C, Herr A. Ultrashort separation length homogeneous electrophoretic immunoassays using on-chip discontinuous polyacrylamide gels. Anal Chem. 2010 Apr 15; 82(8):3343-51. PMID: 20334346.
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      52. He M, Herr A. Polyacrylamide gel photopatterning enables automated protein immunoblotting in a two-dimensional microdevice. J Am Chem Soc. 2010 Mar 3; 132(8):2512-3. PMID: 20131779.
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      53. He M, Herr A. Microfluidic polyacrylamide gel electrophoresis with in situ immunoblotting for native protein analysis. Anal Chem. 2009 Oct 1; 81(19):8177-84. PMID: 19731927.
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      54. Srivastava N, Brennan JS, Renzi RF, Wu M, Branda SS, Singh AK, Herr A. Fully integrated microfluidic platform enabling automated phosphoprofiling of macrophage response. Anal Chem. 2009 May 1; 81(9):3261-9. PMID: 19323537.
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      55. Tia S, Herr A. On-chip technologies for multidimensional separations. Lab Chip. 2009 Sep 7; 9(17):2524-36. PMID: 19680577.
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      56. Ramseier CA, Kinney JS, Herr A, Braun T, Sugai JV, Shelburne CA, Rayburn LA, Tran HM, Singh AK, Giannobile WV. Identification of pathogen and host-response markers correlated with periodontal disease. J Periodontol. 2009 Mar; 80(3):436-46. PMID: 19254128.
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      57. Hou C, Herr A. Clinically relevant advances in on-chip affinity-based electrophoresis and electrochromatography. Electrophoresis. 2008 Aug; 29(16):3306-19. PMID: 18702056.
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      58. Lo CT, Throckmorton DJ, Singh AK, Herr A. Photopolymerized diffusion-defined polyacrylamide gradient gels for on-chip protein sizing. Lab Chip. 2008 Aug; 8(8):1273-9. PMID: 18651068.
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      59. Herr A, Hatch AV, Throckmorton DJ, Tran HM, Brennan JS, Giannobile WV, Singh AK. Microfluidic immunoassays as rapid saliva-based clinical diagnostics. Proc Natl Acad Sci U S A. 2007 Mar 27; 104(13):5268-73. PMID: 17374724.
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      60. Herr A, Hatch AV, Giannobile WV, Throckmorton DJ, Tran HM, Brennan JS, Singh AK. Integrated microfluidic platform for oral diagnostics. Ann N Y Acad Sci. 2007 Mar; 1098:362-74. PMID: 17435142.
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      61. Hatch AV, Herr A, Throckmorton DJ, Brennan JS, Singh AK. Integrated preconcentration SDS-PAGE of proteins in microchips using photopatterned cross-linked polyacrylamide gels. Anal Chem. 2006 Jul 15; 78(14):4976-84. PMID: 16841920.
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      62. Rucker VC, Havenstrite KL, Simmons BA, Sickafoose SM, Herr A, Shediac R. Functional antibody immobilization on 3-dimensional polymeric surfaces generated by reactive ion etching. Langmuir. 2005 Aug 16; 21(17):7621-5. PMID: 16089360.
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      63. Rucker VC, Havenstrite KL, Herr A. Antibody microarrays for native toxin detection. Anal Biochem. 2005 Apr 15; 339(2):262-70. PMID: 15797567.
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      64. Herr A, Throckmorton DJ, Davenport AA, Singh AK. On-chip native gel electrophoresis-based immunoassays for tetanus antibody and toxin. Anal Chem. 2005 Jan 15; 77(2):585-90. PMID: 15649057.
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      65. Herr A, Singh AK. Photopolymerized cross-linked polyacrylamide gels for on-chip protein sizing. Anal Chem. 2004 Aug 15; 76(16):4727-33. PMID: 15307783.
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      66. Herr A, Molho JI, Drouvalakis KA, Mikkelsen JC, Utz PJ, Santiago JG, Kenny TW. On-chip coupling of isoelectric focusing and free solution electrophoresis for multidimensional separations. Anal Chem. 2003 Mar 1; 75(5):1180-7. PMID: 12641239.
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      67. Raisi F, Belgrader P, Borkholder DA, Herr A, Kintz GJ, Pourhamadi F, Taylor MT, Northrup MA. Microchip isoelectric focusing using a miniature scanning detection system. Electrophoresis. 2001 Jul; 22(11):2291-5. PMID: 11504064.
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