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    Dernburg, Abby

    TitleBiologist Senior Faculty SE
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/666-3615
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Köhler S, Wojcik M, Xu K, Dernburg A. Superresolution microscopy reveals the three-dimensional organization of meiotic chromosome axes in intact Caenorhabditis elegans tissue. Proc Natl Acad Sci U S A. 2017 May 30. PMID: 28559338.
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      2. Rog O, Köhler S, Dernburg A. The synaptonemal complex has liquid crystalline properties and spatially regulates meiotic recombination factors. Elife. 2017 Jan 03; 6. PMID: 28045371.
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      3. Yu Z, Kim Y, Dernburg A. Meiotic recombination and the crossover assurance checkpoint in Caenorhabditis elegans. Semin Cell Dev Biol. 2016 Jun; 54:106-16. PMID: 27013114.
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      4. Zhang L, Ward JD, Cheng Z, Dernburg A. The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans. Development. 2015 Dec 15; 142(24):4374-84. PMID: 26552885.
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      5. Kim Y, Kostow N, Dernburg A. The Chromosome Axis Mediates Feedback Control of CHK-2 to Ensure Crossover Formation in C. elegans. Dev Cell. 2015 Oct 26; 35(2):247-61. PMID: 26506311.
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      6. Rog O, Dernburg A. Direct Visualization Reveals Kinetics of Meiotic Chromosome Synapsis. Cell Rep. 2015 Mar 10. PMID: 25772351.
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      7. Kim Y, Rosenberg SC, Kugel CL, Kostow N, Rog O, Davydov V, Su TY, Dernburg A, Corbett KD. The Chromosome Axis Controls Meiotic Events through a Hierarchical Assembly of HORMA Domain Proteins. Dev Cell. 2014 Nov 24; 31(4):487-502. PMID: 25446517.
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      8. Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg A, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ. Comparative analysis of metazoan chromatin organization. Nature. 2014 Aug 28; 512(7515):449-52. PMID: 25164756.
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      9. Rosu S, Zawadzki KA, Stamper EL, Libuda DE, Reese AL, Dernburg A, Villeneuve AM. The C. elegans DSB-2 protein reveals a regulatory network that controls competence for meiotic DSB formation and promotes crossover assurance. PLoS Genet. 2013; 9(8):e1003674. PMID: 23950729.
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      10. Stamper EL, Rodenbusch SE, Rosu S, Ahringer J, Villeneuve AM, Dernburg A. Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint. PLoS Genet. 2013; 9(8):e1003679. PMID: 23990794.
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      11. Rog O, Dernburg A. Chromosome pairing and synapsis during Caenorhabditis elegans meiosis. Curr Opin Cell Biol. 2013 Jun; 25(3):349-56. PMID: 23578368.
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      12. Dernburg A. Pushing the (nuclear) envelope into meiosis. Genome Biol. 2013; 14(3):110. PMID: 23651872.
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      13. Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, Ahringer J. H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation. PLoS Genet. 2012 Sep; 8(9):e1002933. PMID: 23028348.
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      14. Dernburg A. Molecular biology. RNA plays meiotic matchmaker. Science. 2012 May 11; 336(6082):681-2. PMID: 22582252.
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      15. Dernburg A. Formaldehyde fixation of Drosophila tissues onto slides for whole-mount FISH. Cold Spring Harb Protoc. 2012 May; 2012(5). PMID: 22550287.
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      16. Dernburg A. Hybridization to tissues on slides or coverslips for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 May; 2012(5). PMID: 22550288.
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      17. Dernburg A. Microdissection of Drosophila polytene chromosomes for DOP-PCR. Cold Spring Harb Protoc. 2012 Mar; 2012(3):376-9. PMID: 22383634.
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      18. Dernburg A. DOP-PCR amplification of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 Mar; 2012(3):380-4. PMID: 22383635.
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      19. Wynne DJ, Rog O, Carlton PM, Dernburg A. Dynein-dependent processive chromosome motions promote homologous pairing in C. elegans meiosis. J Cell Biol. 2012 Jan 9; 196(1):47-64. PMID: 22232701.
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      20. Dernburg A. Fragmentation and labeling of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1527-30. PMID: 22135656.
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      21. Dernburg A. Hybridization to tissues in suspension for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1534-7. PMID: 22135658.
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      22. Dernburg A. Manual dissection and fixation of Drosophila egg chambers for whole-mount FISH. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1531-3. PMID: 22135657.
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      23. Harper NC, Rillo R, Jover-Gil S, Assaf ZJ, Bhalla N, Dernburg A. Pairing centers recruit a Polo-like kinase to orchestrate meiotic chromosome dynamics in C. elegans. Dev Cell. 2011 Nov 15; 21(5):934-47. PMID: 22018922.
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      24. Dernburg A. In situ hybridization to somatic chromosomes in Drosophila. Cold Spring Harb Protoc. 2011 Sep; 2011(9). PMID: 21880819.
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      25. Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg A, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87. PMID: 21177976.
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      26. Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg A, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS. Broad chromosomal domains of histone modification patterns in C. elegans. Genome Res. 2011 Feb; 21(2):227-36. PMID: 21177964.
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      27. Sato A, Isaac B, Phillips CM, Rillo R, Carlton PM, Wynne DJ, Kasad RA, Dernburg A. Cytoskeletal forces span the nuclear envelope to coordinate meiotic chromosome pairing and synapsis. Cell. 2009 Nov 25; 139(5):907-19. PMID: 19913287.
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      28. Hiraoka Y, Dernburg A. The SUN rises on meiotic chromosome dynamics. Dev Cell. 2009 Nov; 17(5):598-605. PMID: 19922865.
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      29. Phillips CM, Meng X, Zhang L, Chretien JH, Urnov FD, Dernburg A. Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans. Nat Cell Biol. 2009 Aug; 11(8):934-42. PMID: 19620970.
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      30. Kotwaliwale CV, Dernburg A. Old nuclei spring new leaks. Cell. 2009 Jan 23; 136(2):211-2. PMID: 19167324.
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      31. Phillips CM, McDonald KL, Dernburg A. Cytological analysis of meiosis in Caenorhabditis elegans. Methods Mol Biol. 2009; 558:171-95. PMID: 19685325.
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      32. Bhalla N, Wynne DJ, Jantsch V, Dernburg A. ZHP-3 acts at crossovers to couple meiotic recombination with synaptonemal complex disassembly and bivalent formation in C. elegans. PLoS Genet. 2008 Oct; 4(10):e1000235. PMID: 18949042.
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      33. Martinez-Perez E, Schvarzstein M, Barroso C, Lightfoot J, Dernburg A, Villeneuve AM. Crossovers trigger a remodeling of meiotic chromosome axis composition that is linked to two-step loss of sister chromatid cohesion. Genes Dev. 2008 Oct 15; 22(20):2886-901. PMID: 18923085.
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      34. Bhalla N, Dernburg A. Prelude to a division. Annu Rev Cell Dev Biol. 2008; 24:397-424. PMID: 18597662.
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      35. Dernburg A, Misteli T. Nuclear architecture--an island no more. Dev Cell. 2007 Mar; 12(3):329-34. PMID: 17336900.
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      36. Phillips CM, Dernburg A. A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans. Dev Cell. 2006 Dec; 11(6):817-29. PMID: 17141157.
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      37. Carlton PM, Farruggio AP, Dernburg A. A link between meiotic prophase progression and crossover control. PLoS Genet. 2006 Feb; 2(2):e12. PMID: 16462941.
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      38. MacQueen AJ, Phillips CM, Bhalla N, Weiser P, Villeneuve AM, Dernburg A. Chromosome sites play dual roles to establish homologous synapsis during meiosis in C. elegans. Cell. 2005 Dec 16; 123(6):1037-50. PMID: 16360034.
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      39. Phillips CM, Wong C, Bhalla N, Carlton PM, Weiser P, Meneely PM, Dernburg A. HIM-8 binds to the X chromosome pairing center and mediates chromosome-specific meiotic synapsis. Cell. 2005 Dec 16; 123(6):1051-63. PMID: 16360035.
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      40. Bhalla N, Dernburg A. A conserved checkpoint monitors meiotic chromosome synapsis in Caenorhabditis elegans. Science. 2005 Dec 9; 310(5754):1683-6. PMID: 16339446.
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      41. Dernburg A. Meiosis researchers exchange information in the Alps. Dev Cell. 2003 Nov; 5(5):691-3. PMID: 14602070.
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      42. Dernburg A, Karpen GH. A chromosome RNAissance. Cell. 2002 Oct 18; 111(2):159-62. PMID: 12408860.
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      43. Kelly WG, Schaner CE, Dernburg A, Lee MH, Kim SK, Villeneuve AM, Reinke V. X-chromosome silencing in the germline of C. elegans. Development. 2002 Jan; 129(2):479-92. PMID: 11807039.
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      44. Lim CS, Mian IS, Dernburg A, Campisi J. C. elegans clk-2, a gene that limits life span, encodes a telomere length regulator similar to yeast telomere binding protein Tel2p. Curr Biol. 2001 Oct 30; 11(21):1706-10. PMID: 11696330.
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      45. Dernburg A. Here, there, and everywhere: kinetochore function on holocentric chromosomes. J Cell Biol. 2001 Jun 11; 153(6):F33-8. PMID: 11402076.
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      46. Read D, Butte MJ, Dernburg A, Frasch M, Kornberg TB. Functional studies of the BTB domain in the Drosophila GAGA and Mod(mdg4) proteins. Nucleic Acids Res. 2000 Oct 15; 28(20):3864-70. PMID: 11024164.
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      47. Kelly KO, Dernburg A, Stanfield GM, Villeneuve AM. Caenorhabditis elegans msh-5 is required for both normal and radiation-induced meiotic crossing over but not for completion of meiosis. Genetics. 2000 Oct; 156(2):617-30. PMID: 11014811.
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      48. Dernburg A, Zalevsky J, Colaiácovo MP, Villeneuve AM. Transgene-mediated cosuppression in the C. elegans germ line. Genes Dev. 2000 Jul 1; 14(13):1578-83. PMID: 10887151.
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      49. Dernburg A, McDonald K, Moulder G, Barstead R, Dresser M, Villeneuve AM. Meiotic recombination in C. elegans initiates by a conserved mechanism and is dispensable for homologous chromosome synapsis. Cell. 1998 Aug 7; 94(3):387-98. PMID: 9708740.
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      50. Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW. Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. J Cell Biol. 1998 Apr 6; 141(1):5-20. PMID: 9531544.
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      51. Dernburg A, Sedat JW. Mapping three-dimensional chromosome architecture in situ. Methods Cell Biol. 1998; 53:187-233. PMID: 9348510.
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      52. Marshall WF, Straight A, Marko JF, Swedlow J, Dernburg A, Belmont A, Murray AW, Agard DA, Sedat JW. Interphase chromosomes undergo constrained diffusional motion in living cells. Curr Biol. 1997 Dec 1; 7(12):930-9. PMID: 9382846.
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      53. Williams BC, Dernburg A, Puro J, Nokkala S, Goldberg ML. The Drosophila kinesin-like protein KLP3A is required for proper behavior of male and female pronuclei at fertilization. Development. 1997 Jun; 124(12):2365-76. PMID: 9199363.
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      54. Minshull J, Straight A, Rudner AD, Dernburg A, Belmont A, Murray AW. Protein phosphatase 2A regulates MPF activity and sister chromatid cohesion in budding yeast. Curr Biol. 1996 Dec 1; 6(12):1609-20. PMID: 8994825.
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      55. Franke A, Dernburg A, Bashaw GJ, Baker BS. Evidence that MSL-mediated dosage compensation in Drosophila begins at blastoderm. Development. 1996 Sep; 122(9):2751-60. PMID: 8787749.
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      56. Dernburg A, Daily DR, Yook KJ, Corbin JA, Sedat JW, Sullivan W. Selective loss of sperm bearing a compound chromosome in the Drosophila female. Genetics. 1996 Aug; 143(4):1629-42. PMID: 8844151.
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      57. Dernburg A, Sedat JW, Hawley RS. Direct evidence of a role for heterochromatin in meiotic chromosome segregation. Cell. 1996 Jul 12; 86(1):135-46. PMID: 8689681.
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      58. Dernburg A, Broman KW, Fung JC, Marshall WF, Philips J, Agard DA, Sedat JW. Perturbation of nuclear architecture by long-distance chromosome interactions. Cell. 1996 May 31; 85(5):745-59. PMID: 8646782.
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      59. Marshall WF, Dernburg A, Harmon B, Agard DA, Sedat JW. Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster. Mol Biol Cell. 1996 May; 7(5):825-42. PMID: 8744953.
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      60. Hiraoka Y, Dernburg A, Parmelee SJ, Rykowski MC, Agard DA, Sedat JW. The onset of homologous chromosome pairing during Drosophila melanogaster embryogenesis. J Cell Biol. 1993 Feb; 120(3):591-600. PMID: 8425892.
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      61. Falke JJ, Dernburg A, Sternberg DA, Zalkin N, Milligan DL, Koshland DE. Structure of a bacterial sensory receptor. A site-directed sulfhydryl study. J Biol Chem. 1988 Oct 15; 263(29):14850-8. PMID: 3049592.
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